Wengong Jin
(he/him)
Assistant Professor

Research interests
- Computational biology
- Machine learning
Education
- PhD in Electrical Engineering and Computer Science, Massachusetts Institute of Technology
Biography
Wengong Jin is an assistant professor in the Khoury College of Computer Sciences at Northeastern University, based in Boston.
In his research, Jin uses geometric and generative AI models to improve the costly, time-consuming process of drug discovery, with the goal of curing more diseases, more quickly. He pursued this goal as a postdoctoral fellow at the Broad Institute of MIT and Harvard before joining Khoury College in 2024, drawn by the college’s readiness to embrace novel and interdisciplinary research areas.
Jin has published his work in a number of leading AI and biology journals including ICML, NeurIPS, ICLR, Nature, Science, Cell, and PNAS. His work has also been covered by the Guardian, BBC News, CBS Boston, and the Financial Times, and been recognized with the BroadIgnite Award, Dimitris N. Chorafas Prize, and MIT EECS Outstanding Thesis Award. In addition to his teaching and research work at Khoury College, Jin is a visiting research scientist in the Eric and Wendy Schmidt Center at the Broad Institute.
In his free time, Jin likes to play basketball.
Labs and groups
Recent publications
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Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer
Citation: Tinglin Huang, Zhenqiao Song, Rex Ying, Wengong Jin. (2024). Protein-Nucleic Acid Complex Modeling with Frame Averaging Transformer NeurIPS. http://papers.nips.cc/paper_files/paper/2024/hash/e6114e62fdb36d6d91ff43334e763a0e-Abstract-Conference.html -
Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates
Citation: Zhenqiao Song, Yunlong Zhao , Wenxian Shi, Wengong Jin, Yang Yang , Lei Li . (2024). Generative Enzyme Design Guided by Functionally Important Sites and Small-Molecule Substrates ICML. https://openreview.net/forum?id=ATvN9JnqZ8 -
RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching
Citation: Divya Nori, Wengong Jin. (2024). RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching ICML. https://openreview.net/forum?id=jxvqvZLBuU -
SurfPro: Functional Protein Design Based on Continuous Surface
Citation: Zhenqiao Song, Tinglin Huang, Lei Li , Wengong Jin. (2024). SurfPro: Functional Protein Design Based on Continuous Surface ICML. https://openreview.net/forum?id=a8QpoEJCRI